|
Post by djoser-xyyman on Sept 5, 2011 13:36:04 GMT -5
"No evidence of Neandertal admixture in the mitochondrial genomes of early European modern humans and contemporary Europeans" by Silvia Ghirotto, Francesca Tassi, Andrea Benazzo, Guido Barbujani Article first published online: 24 AUG 2011 American Journal of Physical Anthropology DOI: 10.1002/ajpa.21569 onlinelibrary.wiley.com/doi/10.1002/ajpa.21569/abstractKeywords: ancient DNA; population genetics; Approximate Bayesian Computations; coalescent simulations; admixture Abstract Neandertals, the archaic human form documented in Eurasia until 29,000 years ago, share no mitochondrial haplotype with modern Europeans. Whether this means that the two groups were reproductively isolated is controversial, and indeed nuclear data have been interpreted as suggesting that they admixed. We explored the range of demographic parameters that may have generated the observed mitochondrial diversity, simulating 3.0 million genealogies under six models differing as for the relationships among contemporary Europeans, Neandertals, and Upper Palaeolithic European early modern humans (EEMH), who coexisted with Neandertals for millennia. We compared by Approximate Bayesian Computations the simulation results with mitochondrial diversity in 7 Neandertals, 3 EEMH, and 150 opportunely chosen modern Europeans. A model of genealogical continuity between EEMH and contemporary Europeans, with no Neandertal contribution, received overwhelming support from the analyses. The maximum degree of Neandertal admixture, under the model of gene flow supported by nuclear data, was estimated at 1.5%, but this model proved 20–32 times less likely than a model without any gene flow. Nuclear and mitochondrial evidence might be reconciled if smaller population sizes led to faster lineage sorting for mitochondrial DNA, and Neandertals shared a longer period of common ancestry with the non-African's than with the African's ancestors. Am J Phys Anthropol, 2011. © 2011 Wiley-Liss, Inc.
|
|
|
Post by djoser-xyyman on Sept 6, 2011 7:06:53 GMT -5
DISCUSSION Nordborg (1998) first remarked that the nonoverlap between Neandertal and modern mtDNA variation does not imply that there was no admixture, because, at the low Palaeolithic population sizes, drift could have eliminated rare, and even not-so-rare, haplotypes. The question,
then, became how rare a haplotype should be, and how small the population, to produce the observed absence of Neandertal haplotypes in modern subjects, despite admixture having actually occurred. Currat and Excoffier (2004) demonstrated by simulation that the absence of Neandertal mtDNAs in the modern gene pool is compatible with a maximum interbreeding rate 5 0.1%, which translates into 1 admixture event every 100 years, during the coexistence of the two human forms in Europe. Belle et al. (2009) incorporated EEMH sequences in their analyses, but still failed to find evidence for any appreciable degree of Neandertal admixture in the European mtDNA pool. For methodological reasons, in both studies mutation rates and population sizes had to be fixed at the start of the simulation. Conversely, the ABC methods we employed in this study allowed us to explore for each model a broad and continuous range of population sizes, mutation rates and, when applicable, separation times and gene flow rates. In this way, the models were compared in a statistically rigorous way, and their final performance is independent of any specific value of the simulation parameters. We found that the best estimate by far of mitochondrial admixture between Neandertals and the ancestors of modern Europeans is zero. Even at very low population sizes and with high mutation rates, the patterns of diversity observed in ancient and modern samples appear incompatible with a Neandertal contribution to the mitochondrial genealogy of EEMH and modern Europeans. There is reason to believe that the estimates we obtained can be trusted. The shapes of the posterior probability distributions, the posterior predictive tests, and several statistics estimated from the simulated data strongly suggest that the information available was sufficient to discriminate among models, and that most parameters are well estimated. The main area of uncertainty concerns the modern population sizes, which appear extremely large and distributed across the whole range of the prior distribution. This finding is not unusual in studies of this kind (Fagundes et al., 2007; Belle et al., 2009; Wegmann et al., 2009; Laval et al., 2010), and does not seem to reflect the choice of priors. Rather, it is probably a consequence of a simplistic, yet unavoidable, assumption, namely that populations evolved in isolation. In reality, people with different mitochondrial features must have migrated for millennia from other regions. This process resulted in an increase of genetic diversity, which the model accommodated by inflating the population size estimates. However, it is hard to imagine that the Neandertal contribution to the modern gene pool would be more likely in a (much more complicated) model also considering successive gene flow from multiple modern sources. On the other hand, such a complicated model would require the estimation of a very large number of parameters (i.e., migration rates between all possible pairs of populations), resulting in a
Fig. 5. Schematic view of the gene genealogies for markers transmitted by one (left) and two (right) parents, in Neandertals and modern humans. a: time since the mitochondrial most recent common ancestors; b: time since the autosomal most recent common ancestor; d: excess evolutionary time shared with Neandertals only by the lineage leading to non-African modern people; AF, NON-AF: African and Non-African modern populations.
loss of accuracy in the estimation of the parameters that really matter, i.e., admixture rates between Neandertals and anatomically modern people. In the recent genome survey, Neandertals appeared genetically closer to non-Africans than to Africans. This observation was interpreted as evidence of admixture between Neandertals and the common ancestors of Asians and Europeans, in the Levant, resulting in a Neandertal contribution to the modern genomes estimated between 1% and 4%. Alternative explanations are possible, but were considered less likely (Green et al., 2010). However, the poor performance of Model 6 in this study shows that the hypothesis of early admixture in the Levant has some problems too. Unless we have made serious errors in the interpretation of mitochondrial data, the model favored by the analysis of nuclear diversity seems to account very poorly, if at all, for the observed patterns of mitochondrial diversity in archaic and contemporary populations of Europe. Only one complete Neandertal genome has been studied so far, and, given the rigid standards established to guarantee the quality of the data, sample size is not going to increase any time soon. A second problem is that the admixture model between Neandertal and anatomically modern populations proposed by Green et al. (2010) implies that the ancestors of all modern humans who left Africa had contacts with Neandertals, including those from Papua New Guinea. On the contrary, it is possible that ancestral modern humans also dispersed from Africa via a Southern route, through the Arab peninsula, the Indian subcontinent and Melanesia. This hypothesis was proposed to account for temporal and spatial patterns of cranial diversity (Lahr and Foley, 1994), has been supported by analyses of mtDNA variation (Quintana-Murci et al., 1999; Maca- Meyer et al., 2001; Macaulay et al., 2005) and, recently, by the analysis of [100,000 nuclear single-nucleotide polymorphisms (Ghirotto et al., 2011). If some modern populations of Southern Asia and Papua New Guinea are descended frompeople who left Africa without crossing Palestine, we see no way that their ancestors could have met, and hybridized with, Neandertals. Therefore, their genetic affinities with Neandertals must have a different origin.
It is thus necessary to find another explanation for the discrepancy between the apparent implications of the mitochondrial and nuclear analyses. In principle, two possibilities, neither simple to support empirically, would be sex-biased gene flow and hybrid selection. The former means that maybe Neandertal males, but not females, admixed with early anatomically modern Europeans. This is in contrast with studies of sex-biased admixture in modern communities, suggesting that the invading population tends to incorporate females more than males (Abe-Sandes et al., 2004; Goncalves et al., 2008; Gonzalez-Andrade et al., 2007; Stefflova et al., 2009; Quintana-Murci et al., 2010); to what extent this might also apply to prehistoric populations, nobody knows. Hybrid selection could account for the observed differences between admixture estimates if Neandertal mtDNAs had lower fitness in combination with a hybrid nuclear genome. Once again, we see no way to test empirically whether that was actually the case. Moving on to testable hypotheses, a simple process of genetic drift after admixture is not the explanation we seek (see Fig. 3). In addition, in a simple admixture model, alleles passed from a resident to an invading population are expected to often surf to high frequencies if the invading populations also undergoes demographic growth (Currat et al., 2008). Because the incoming EEMH doubtless increased in numbers, even small Neandertal contributions should be detectable in the gene pool of their descendants, which is not the case for the European mtDNAs (Currat and Excoffier, 2004; this study). To reconcile findings based on nuclear and mitochondrial variation we thus need a more articulate model, of which genetic drift is only a component. Many studies of modern DNA data have suggested that the common ancestors of Neandertals and modern humans might have been geographically structured (Falush et al., 2003; Harding and McVean, 2004; Lahr and Foley, 1994). A few simple calculations show that this possibility, also mentioned by Green et al. (2010), should be taken seriously (see Fig. 5). The expected time since the MRCA is 2N generations for mtDNA, where N is the female population size; if the sex ratio among Neandertals was 1 female : 1 male, the age of the nuclear DNA MRCA
should be 4 times as large. Briggs et al. (2009) quantified the size of the Neandertal female population around 3,500 or less. This means that the mitochondrial and nuclear MRCAs of Neandertals can be placed respectively 7,000 generations (or 175,000 years) and 28,000 generations (or 700,000 years) ago. These figures come with a large standard error, but imply that if the lineages leading to Neandertals and modern humans separated between 175,000 and 700,000 years ago, one would expect exactly what has been observed, namely independent mtDNA genealogies, and a certain degree of allele sharing at the autosomal level (see Fig. 5). On the basis of cranial measurements, anatomically archaic and modern humans separated between 311,000 and 435,000 years ago, with an upper limit of 592,000 (Weaver et al. 2008, and references therein). In this paper, we estimated that the same event occurred about 295,000 years ago (median value), with an upper 95% limit of 646,200 years. Therefore, the Replacement model with structured ancestral population is in reasonable agreement with fossil, nuclear DNA and mtDNA evidence, whereas the model of admixture fails to account for the observed relationships between ancient and modern mtDNAs. Under a model in which the ancestral population was structured, the greater nuclear similarity between Neandertals and non-Africans would not necessarily require admixture between them. Indeed, if the non-Africans shared with Neandertals a longer section of their genealogy (represented by the interval labeled as d in Fig. 5), they would also share more alleles than Africans and Neandertals, including the derived alleles upon which Green et al. (2010) based their estimates. This view is also supported by data on the DNA of the human gastric parasite Helicobacter pilori, in which ancestral genetic clusters seem to have given rise to two distinct populations, one exclusively African and the other cosmopolitan (Falush et al., 2003), and by the extreme levels of DNA variation still present in Africa (Schuster et al., 2010; Henn et al., 2011). The only additional assumption one has to make to account for the observed results is that the latter population was also ancestral to the European Neandertals typed by Green et al. (2010). Therefore, the hypothesis of genetic drift in a structured ancestral population, in which Neandertals shared a longer period of common ancestry with the non-African’s than with the African’s ancestors, seems to reconcile most findings about DNA diversity in Neandertal and modern people. This hypothesis predicts that the nuclear alleles preferentially shared by Neandertals and non-African will have MRCAs falling in the upper part of the genealogy (d interval in Fig. 5), and we are preparing to test this hypothesis.
|
|
|
Post by zarahan on Feb 9, 2012 19:51:52 GMT -5
How do you see the claim of EUropeans having traces of Neanderthal DNA, namely the article "Draft Sequence of the Neanderthal Genome" by Green et al, 2010?
Abstract
Neandertals, the closest evolutionary relatives of present-day humans, lived in large parts of Europe and western Asia before disappearing 30,000 years ago. We present a draft sequence of the Neandertal genome composed of more than 4 billion nucleotides from three individuals. Comparisons of the Neandertal genome to the genomes of five present-day humans from different parts of the world identify a number of genomic regions that may have been affected by positive selection in ancestral modern humans, including genes involved in metabolism and in cognitive and skeletal development. We show that Neandertals shared more genetic variants with present-day humans in Eurasia than with present-day humans in sub-Saharan Africa, suggesting that gene flow from Neandertals into the ancestors of non-Africans occurred before the divergence of Eurasian groups from each other.
WHat's your take, or critique of the claim?
|
|
|
Post by Tukuler al~Takruri on Feb 9, 2012 22:06:28 GMT -5
This thread's title is misleading in omitting the mtDNA qualifier.
Neanderthal mtDNA may be absent but the Homo saiens sapiens genome has both Neanderthal and Denisovan, i.e., extinct human genetic markers.
Sexual bias may be the reason for no Neanderthal mtDNA in Hss or inability of Neanderthal females to birth fertile offspring from male Hss seed. Eg. jack + mare = mule; mule = end of the line.
|
|
|
Post by zarahan on Feb 9, 2012 22:08:22 GMT -5
Thanks
|
|
|
Post by djoser-xyyman on Feb 15, 2012 20:39:29 GMT -5
Says who!! Neanderthals did NOT admix with AMH! Please keep up. **sigh**
======= Neandertals, the archaic human form documented in Eurasia until 29,000 years ago, share no mitochondrial haplotype with modern Europeans
Whether this means that the two groups were reproductively isolated is controversial
|
|
|
Post by seekeroftruth on Mar 14, 2012 23:52:22 GMT -5
How does the Neanderthal admixture hypothesis factor into this?
|
|
|
Post by djoser-xyyman on Mar 15, 2012 19:18:10 GMT -5
^ not sure who you are replying to but. . . . .
the 2010 study concluded that about 4% of non-African genome are from Neanderthal.
The 2011 study conclude - - -and- - - many previous studies (notably Baubatngi's?) conclude Europeans have absolutely no Neanderthal genes. Some of the reasons being - AMH travelled across the Horn then headed south. Therefore it was impossible for them to come in contact with their cousins. . in the Levant. (in case you miss the point - that means Australians had no contact with Neanderthals).
Two, The timeline do not add up.
And three, the genes location do NOT match.
eg. Neandethal may have had red hair, yes, but they did not give AMH(Europeans) their red hair. The location of this specific red hair gene has no correlation between AMH and their cousins. and the mechanism is totally different. But that does not stop Genetic testing companies from selling snake oil. Many racist and the ignorant are lured into believing they are related to Neanderthals.
|
|
|
Post by seekeroftruth on Mar 19, 2012 10:02:58 GMT -5
^ not sure who you are replying to but. . . . . the 2010 study concluded that about 4% of non-African genome are from Neanderthal. The 2011 study conclude - - -and- - - many previous studies (notably Baubatngi's?) conclude Europeans have absolutely no Neanderthal genes. Some of the reasons being - AMH travelled across the Horn then headed south. Therefore it was impossible for them to come in contact with their cousins. . in the Levant. (in case you miss the point - that means Australians had no contact with Neanderthals). Two, The timeline do not add up. And three, the genes location do NOT match. eg. Neandethal may have had red hair, yes, but they did not give AMH(Europeans) their red hair. The location of this specific red hair gene has no correlation between AMH and their cousins. and the mechanism is totally different. But that does not stop Genetic testing companies from selling snake oil. Many racist and the ignorant are lured into believing they are related to Neanderthals. I wasn't replying to anyone in particular, just to anyone who cared to share.
|
|
|
Post by djoser-xyyman on May 30, 2012 21:42:27 GMT -5
Cioclovina (Romania): affinities of an early modern European.
Harvati K, Gunz P, Grigorescu D.
Source
Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig, Germany. harvati@eva.mpg.de
Abstract
The current modern human origins debate centers on the possibility and degree of admixture between indigenous archaic humans and modern human populations migrating out of Africa into Europe and Asia in the Late Pleistocene. Evidence for such admixture must be sought in the earliest fossil record of modern humans outside Africa, as it is those populations that would have encountered, and possibly interbred with, archaic hominins. In the case of Europe, the recent application of direct dating techniques has eliminated several specimens from the Upper Paleolithic fossil record, while confirming early ages for others. Among these earliest reliably dated specimens is the Cioclovina calvaria from Romania. This individual is of highest importance for the understanding of modern human origins in Europe, and has recently been proposed to represent a Neanderthal-modern human hybrid. We present a short description and a three-dimensional (3D) geometric morphometric analysis of the Cioclovina specimen using a large geographic sample of recent humans, Neanderthals and Middle and Late Pleistocene fossil hominins from Europe, Africa, and the Levant, in order to establish its phenetic affinities and to evaluate its morphology for evidence of admixture between Neanderthals and early modern Europeans. Our results show Cioclovina to be entirely modern in its cranial shape, and do not support the hypothesis that it represents a hybrid.
|
|
|
Post by djoser-xyyman on May 30, 2012 21:43:35 GMT -5
A critical review of the German Paleolithic hominin record.
Street M, Terberger T, Orschiedt J.
Source
Forschungsbereich Altsteinzeit des Römisch-Germanischen Zentralmuseums, Schloss Monrepos, D-56567 Neuwied, Germany. street@rgzm.de
Abstract
We review the hominin fossil record from western Central Europe in light of the recent major revisions of the geochronological context. The mandible from Mauer (Homo heidelbergensis), dated to circa 500,000 years ago, continues to represent the earliest German hominin and may coincide with the occupation of Europe north of the high alpine mountain chains. Only limited new evidence is available for the Middle Pleistocene, mostly in the form of skull fragments, a pattern that may relate to taphonomic processes. These finds and their ages suggest the gradual evolution of a suite of Neandertal features during this period. Despite new finds of classic Neandertals, there is no clear proof for Neandertal burial from Germany. Alternatively, cut marks on a skull fragment from the Neandertal type site suggest special treatment of that individual. New Accelerator Mass Spectrometry (AMS) radiocarbon dates of previous finds leave little reliably dated evidence for anatomically modern humans (AMH) in Europe before 30,000 BP; the remains from Hahnöfersand, Binshof-Speyer, Paderborn-Sande, and Vogelherd are now of Holocene age. Thus, a correlation of AMH with the Aurignacian remains to be proven, and the general idea of a long coexistence of Neandertals and AMH in Europe may be questioned. In western Central Europe, evidence of Gravettian human fossils is also very limited, although a new double grave from lower Austria may be relevant. The only dated burial from the German Upper Paleolithic (from Mittlere Klause) falls into a time period (circa 18,600 BP) represented by only a few occupation sites in western Central Europe. A number of human remains at Magdalenian sites appear to result from variable (secondary) burial practices. In contrast, the Final Paleolithic (circa 12,000-9600 cal. BC) yields an increase of hominin finds, including multiple burials (Bonn-Oberkassel, Neuwied-Irlich), similar to the situation in western and southern Europe
|
|
|
Post by djoser-xyyman on May 30, 2012 21:44:15 GMT -5
Vindija cave and the modern human peopling of Europe.
Jankoviæ I, Karavaniæ I, Ahern JC, Brajkoviæ D, Lenardiæ JM, Smith FH.
Source
Institute for Anthropological Research, Zagreb, Croatia. ivor@inantro.hr
Abstract
Vindija cave in Croatia has yielded the youngest securely dated Neandertal skeletal remains in Central/Eastern Europe. In addition, these remains have been found in association with archaeological material exhibiting Upper Paleolithic elements. Due to its geographic location and date, the Vindija remains are particularly crucial for the understanding of initial modern human peopling of Europe and the nature of the Neandertal demise. The significance of archaeological and paleontological finds and hominin fossils from this site is discussed in the light of new finds at Vindija and recent developments in the fields of paleoanthropology and prehistoric archaeology. Furthermore, the impact of revised chronology for several crucial specimens and sites throughout Europe, including Vindija, is discussed.
PMID:
17058508
[PubMed - indexed for MEDLINE]
Hunters of the Ice Age: The biology of Upper Paleolithic people.
Holt BM, Formicola V.
Source
Department of Anthropology, University of Massachusetts, Amherst, MA 01003, USA. holtb@anthro.umass.edu
Abstract
The Upper Paleolithic represents both the phase during which anatomically modern humans appeared and the climax of hunter-gatherer cultures. Demographic expansion into new areas that took place during this period and the diffusion of burial practices resulted in an unprecedented number of well-preserved human remains. This skeletal record, dovetailed with archeological, environmental, and chronological contexts, allows testing of hypotheses regarding biological processes at the population level. In this article, we review key studies about the biology of Upper Paleolithic populations based primarily on European samples, but integrating information from other areas of the Old World whenever possible. Data about cranial morphology, skeletal robusticity, stature, body proportions, health status, diet, physical activity, and genetics are evaluated in Late Pleistocene climatic and cultural contexts. Various lines of evidence delineate the Last Glacial Maximum (LGM) as a critical phase in the biological and cultural evolution of Upper Paleolithic populations. The LGM, a long phase of climatic deterioration culminating around 20,000 BP, had a profound impact on the environment, lifestyle, and behavior of human groups. Some of these effects are recorded in aspects of skeletal biology of these populations. Groups living before and after the LGM, Early Upper Paleolithic (EUP) and Late Upper Paleolithic (LUP), respectively, differ significantly in craniofacial dimensions, stature, robusticity, and body proportions. While paleopathological and stable isotope data suggest good health status throughout the Upper Paleolithic, some stress indicators point to a slight decline in quality of life in LUP populations. The intriguing and unexpected incidence of individuals affected by congenital disorders probably indicates selective burial practices for these abnormal individuals. While some of the changes observed can be explained through models of biocultural or environmental adaptation (e.g., decreased lower limb robusticity following decreased mobility; changes in body proportions along with climatic change), others are more difficult to explain. For instance, craniodental and upper limb robusticity show complex evolutionary patterns that do not always correspond to expectations. In addition, the marked decline in stature and the mosaic nature of change in body proportions still await clarifications. These issues, as well as systematic analysis of specific pathologies and possible relationships between genetic lineages, population movements and cultural complexes, should be among the goals of future research.
PMID:
|
|
|
Post by djoser-xyyman on Dec 18, 2012 22:07:00 GMT -5
GB, Brisighelli F, Sanchez-Diz: The peopling of Europe and the cautionary tale of Y chromosome lineage R-M269. 2012
Abstract
Recently, the debate on the origins of the major European Y chromosome haplogroup R1b1b2-M269 has reignited, and opinion has moved away from Palaeolithic origins to the notion of a younger Neolithic spread of these chromosomes from the Near East. Here, we address this debate by investigating frequency patterns and diversity in the largest collection of R1b1b2-M269 chromosomes yet assembled. Our analysis reveals no geographical trends in diversity, in contradiction to expectation under the Neolithic hypothesis, and suggests an alternative explanation for the apparent cline in diversity recently described. We further investigate the young, STR-based time to the most recent common ancestor estimates proposed so far for R-M269-related lineages and find evidence for an appreciable effect of microsatellite choice on age estimates. As a consequence, the existing data and tools are insufficient to make credible estimates for the age of this haplogroup, and conclusions about the timing of its origin and dispersal should be viewed with a large degree of caution.
|
|
|
Post by djoser-xyyman on Dec 18, 2012 22:08:38 GMT -5
For those insisting on Neanderthal admixture....
A major Y-chromosome haplogroup R1b Holocene era
founder effect in Central and Western Europe
Natalie M Myres1, Siiri Rootsi2, Alice A Lin3, Mari Ja¨rve2, Roy J King3, Ildus Kutuev2,4, Vicente M Cabrera5,
Elza K Khusnutdinova4, Andrey Pshenichnov2,6, Bayazit Yunusbayev2,4, Oleg Balanovsky2,6, Elena Balanovska6,
Pavao Rudan7, Marian Baldovic2,8, Rene J Herrera9, Jacques Chiaroni10, Julie Di Cristofaro10, Richard Villems2,
Toomas Kivisild11 and Peter A Underhill*,3
The phylogenetic relationships of numerous branches within the core Y-chromosome haplogroup R-M207 support a West Asian
origin of haplogroup R1b, its initial differentiation there followed by a rapid spread of one of its sub-clades carrying the M269
mutation to Europe. Here, we present phylogeographically resolved data for 2043 M269-derived Y-chromosomes from 118 West
Asian and European populations assessed for the M412 SNP that largely separates the majority of Central and West European
R1b lineages from those observed in Eastern Europe, the Circum-Uralic region, the Near East, the Caucasus and Pakistan.
Within the M412 dichotomy, the major S116 sub-clade shows a frequency peak in the upper Danube basin and Paris area with
declining frequency toward Italy, Iberia, Southern France and British Isles. Although this frequency pattern closely approximates
the spread of the Linearbandkeramik (LBK), Neolithic culture, an advent leading to a number of pre-historic cultural
developments during the past r10 thousand years, more complex pre-Neolithic scenarios remain possible for the L23(xM412)
components in Southeast Europe and elsewhere.
European Journal of Human Genetics (2011) 19, 95–101; doi:10.1038/ejhg.2010.146; published online 25 August 2010
INTRODUCTION
The complex pattern of European Y-chromosome diversity has been
ascribed to anatomically modern human dispersals, incorporating the
combined heritage of initial upper Paleolithic colonization, secondary
post-glacial mesolithic re-expansions and the Neolithic era demic
diffusion of agriculturalists from the Near East.1 Regardless of possibly
a minor autosomal contribution, as yet, there is no Y-chromosome
evidence of hybridization between Neanderthals and modern human
beings.2,3
|
|
|
Post by djoser-xyyman on Jul 6, 2019 20:21:41 GMT -5
Quote: Figure 4. Locating the source of the strongest linear trend of Neanderthal fraction. Evenly-spaced locations were chosen across Africa and Eurasia (worldgraph.10k, geography package, R) and from each all land-only distances to the Eurasian samples in the Simons Genome Diversity Panel set were calculated and the t-value of the regression against Neanderthal fraction noted. The resulting heatmap reveals a high-point (dark red) around Northeast Egypt and a strongly positive slope indicating the Neanderthal fraction increases with distance from Africa.Differential base-sharing between humans and Neanderthals: inter-breeding or greater mutability in heterozygotes?Author and corresponding author: William Amos Affiliation: Department of Zoology, Downing Street, Cambridge, CB2 3EJ, UK
|
|