Post by djoser-xyyman on Aug 16, 2017 10:29:30 GMT -5
OH! I believe they are talking SAM Files " reads the colon-delimited text file(s"
Oh no! It works on Win also version 3.0
Quote:
The short tandem repeat allele identification tool (STRait Razor), a program used to characterize the haplotypes of short tandem repeats (STRs) in massively parallel sequencing (MPS) data, was redesigned.
Written in a portable compiled language, C++, STRait Razor v3.0 functions on all major operating systems including Microsoft Windows, and it has cross-platform multithreading support.
Note that STRait Razor was designed initially for capturing short tandem repeats (STRs), but it can now detect single nucleotide polymorphisms (SNPs) and insertions/deletions (indels). The presence of these anchors in the correct orientation
STRait Razor v3.0 provides a marked improvement of the allele identification strategy employed by its previous versions. STRait Razor v3.0 is fast, in part owing to its development in a compiled programming language (C++) and in part to an indexing strategy that is tailored for fast approximate search of anchor sequences. STRait Razor v3.0 is multithreaded, allowing it to exploit multicore CPUs. Further, it no longer requires regular files and instead can use the standard input stream, allowing it to process compressed File formats and generally function in analysis pipelines. STRait Razor v3.0 also has the ability to selectively filter loci by type (e.g., one can attempt to find only autosomal loci or any other user-defined type). The tool can optionally place haplotypes onto the positive strand, and low-frequency haplotypes can be excluded from the output, thus simplifying the reporting process. STRait Razor v3.0 also uses a conservative set of requirements used to resolve ambiguous haplotype identities, and it has the ability to compute the length-based nomenclature of STRs without prior expectations on haplotype lengths.
STRait Razor v3.0 is open source and freely available at github.com/Ahhgust/STRaitRazor and
at www.unthsc.edu/graduate-school-of-biomedical-sciences/molecular-and-medical- genetics/laboratory-faculty-and-staff/strait-razor,
along with standard configuration files that will enable it to be used on a variety of MPS systems. Comments and findings that could
improve the performance of STRait Razor v3.0 are welcome and encouraged.
Oh no! It works on Win also version 3.0
Quote:
The short tandem repeat allele identification tool (STRait Razor), a program used to characterize the haplotypes of short tandem repeats (STRs) in massively parallel sequencing (MPS) data, was redesigned.
Written in a portable compiled language, C++, STRait Razor v3.0 functions on all major operating systems including Microsoft Windows, and it has cross-platform multithreading support.
Note that STRait Razor was designed initially for capturing short tandem repeats (STRs), but it can now detect single nucleotide polymorphisms (SNPs) and insertions/deletions (indels). The presence of these anchors in the correct orientation
STRait Razor v3.0 provides a marked improvement of the allele identification strategy employed by its previous versions. STRait Razor v3.0 is fast, in part owing to its development in a compiled programming language (C++) and in part to an indexing strategy that is tailored for fast approximate search of anchor sequences. STRait Razor v3.0 is multithreaded, allowing it to exploit multicore CPUs. Further, it no longer requires regular files and instead can use the standard input stream, allowing it to process compressed File formats and generally function in analysis pipelines. STRait Razor v3.0 also has the ability to selectively filter loci by type (e.g., one can attempt to find only autosomal loci or any other user-defined type). The tool can optionally place haplotypes onto the positive strand, and low-frequency haplotypes can be excluded from the output, thus simplifying the reporting process. STRait Razor v3.0 also uses a conservative set of requirements used to resolve ambiguous haplotype identities, and it has the ability to compute the length-based nomenclature of STRs without prior expectations on haplotype lengths.
STRait Razor v3.0 is open source and freely available at github.com/Ahhgust/STRaitRazor and
at www.unthsc.edu/graduate-school-of-biomedical-sciences/molecular-and-medical- genetics/laboratory-faculty-and-staff/strait-razor,
along with standard configuration files that will enable it to be used on a variety of MPS systems. Comments and findings that could
improve the performance of STRait Razor v3.0 are welcome and encouraged.