To those interested. Working on these…doing my own thing
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Sahara/North Sahara Genomes
Indigenous North Africans(Berbers) dataset
www.upf.edu/web/human-genome-diversity/software-dataSouth Saharan - African genomes database
ega-archive.org/studies/EGAS00001000959Igbo- Nigeria
Sotho – south africa
Ethiopians (Amhara, Oromo, Somali; subset of Ethiopian Genome Project Genotyping).
Jola - Senegal – Guinea Bissau
Kikuyu - Kenya
Wolof - Senegal
Barundi – mouth of Great Lakes
Kalenjin - Kenya
Banyarwanda- mouth of Great Lakes
Fula- trans Africa
Baganda.- Buganda is a subnational kingdom within Uganda
Zulu – South Africa
Mandinka - Guinea, Ivory Coast, Mali, Senegal, the Gambia and Guinea-Bissau.
Ga-Adangbe- The Ga-Adangme, Gã-Adaŋbɛ, Ga-Dangme, or GaDangme are an ethnic group in Ghana and Togo
Dataset ID Description Technology Samples
EGAD00010001045
APCDR AGV Project: Array data from 99 Igbo. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2.5-4v1_B 99
EGAD00010001046
APCDR AGV Project: Array data from 86 Sotho. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2-5_8v1_A 86
EGAD00010001047
APCDR AGV Project: Array data from 107 Ethiopians (Amhara, Oromo, Somali; subset of Ethiopian Genome Project Genotyping). Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2-5_8v1_A 107
EGAD00010001048
APCDR AGV Project: Array data from 79 Jola. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2-5_8v1_A 79
EGAD00010001049
APCDR AGV Project: Array data from 99 Kikuyu. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2.5-4v1_B 99
EGAD00010001050
APCDR AGV Project: Array data from 78 Wolof. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2-5_8v1_A 78
EGAD00010001051
APCDR AGV Project: Array data from 97 Barundi. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2-5_8v1_A 97
EGAD00010001052
APCDR AGV Project: Array data from 100 Kalenjin. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2.5-4v1_B 100
EGAD00010001053
APCDR AGV Project: Array data from 100 Banyarwanda. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2.5-4v1_B and HumanOmni2-5_8v1_A 100
EGAD00010001054
APCDR AGV Project: Array data from 74 Fula
Illumina HumanOmni2-5_8v1_A 74
Dataset ID Description Technology Samples
EGAD00010001055
APCDR AGV Project: Array data from 100 Baganda. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2.5-4v1_B and HumanOmni2-5_8v1_A 100
EGAD00010001056
APCDR AGV Project: Array data from 100 Zulu. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2.5-4v1_B and HumanOmni2-5_8v1_A 100
EGAD00010001057
APCDR AGV Project: Array data from 88 Mandinka. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2-5_8v1_A 88
EGAD00010001058
APCDR AGV Project: Array data from 100 Ga-Adangbe. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2.5-4v1_B and HumanOmni2-5_8v1_A 100
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