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Post by BlessedbyHorus on Oct 23, 2018 12:22:19 GMT -5
Come back to Egyptsearch.
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Post by zarahan on Oct 24, 2018 14:04:19 GMT -5
An African source of all “Eurasian” populations!!! IBD Let me explain assuming you don’t understand my point. The Genotype/phenotypic features of Cape Verde and Madagascar can NOT be explained either by Indonesian women sailing to Africa 2000years ago or by Portuguese Sailors co-habiting my West Africans women in the 1600’s. The genetic data do not support these hypotheses. It is made up BS by Europeans!!! But I digress. Back on topic What's this "neo African" on your pie chart?
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Post by Tukuler al~Takruri on Oct 24, 2018 19:18:57 GMT -5
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Post by djoser-xyyman on Oct 25, 2018 6:18:19 GMT -5
I never left Egyptsearch. I was kicked out. BTW- The ban was still not lifted as of this morning when I tried logging on. 25thOCT18 Come back to Egyptsearch.
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Post by BlessedbyHorus on Oct 25, 2018 8:04:39 GMT -5
Wait who banned you again and why? Because you were unbanned before. I never left Egyptsearch. I was kicked out. BTW- The ban was still not lifted as of this morning when I tried logging on. 25thOCT18 Come back to Egyptsearch.
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Post by djoser-xyyman on Oct 25, 2018 8:38:41 GMT -5
Are you playing coy with me BBH? Look at my Avatar on ES(Ext Vacation). I have been banned/not able to post for at least 1 1/2 month!!! Either you, Punk Rey, EM or Sammi/Neil did it. Don't tell me you did not know?! Lioness do not have the power to do that. I tried this morning and I still am banned. It is saying my "posting privileges have been revoked or my membership not approved". Someone pulled the plug from underneath me!! As I said we as black people do not need white people. We can run this world our selves. we have done it over 200,000years or 199,500years. Not counting the last 500years. lol! If I am "unbanned' keep in mind my style and post content will NOT change. I call it as I see it... Wait who banned you again and why? Because you were unbanned before. I never left Egyptsearch. I was kicked out. BTW- The ban was still not lifted as of this morning when I tried logging on. 25thOCT18
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Post by djoser-xyyman on Oct 25, 2018 8:56:05 GMT -5
Go ask "Management". You do realize you are being a tool by these people. Just saying...... Who is Management? Punk Rey or Neal/Sammi. I believe ElMaestro and Lioness are tools like you. But I have to put some of the blame on Sage. He had the keys and he gave it away. No telling how long he would have kept it but at least he had it.
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Post by BlessedbyHorus on Oct 25, 2018 12:10:26 GMT -5
No. I asked you WHY and WHO banned you. Because I didn't. Anyways I lifted your suspension so stay outta trouble.
And don't worry if I'm a "tool" or whatever, just be glad one of the admins still vouching for your ass.
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Post by djoser-xyyman on Oct 25, 2018 12:13:18 GMT -5
Anyways. A major break through!!!!!! I have it...sort of. Well it looks like the CODIS STRs were indeed "removed' from the Abusir before they were made "freely" available on-line. I have NOT completed the entire dataset but the fact is some if not all the CODIS STR is not there. I did not need LobSTR software. The BAmAnalysis kkit cited above did the trick. Anyone can do it. This is how Here is the process: 1. Run the BAMAnaylsis Software as described above(Windows based). And obtain the VCF files for the Abusirs. 2. Use MS Excel to open the VCF files. You can open one Chromosome VCF file at a time. In this example I used Chr 2 3. The region of interest and CODIS repeats can be obtained manually or visually see table below. Eg TPOX CODIS lies in region 1493425 - 1493456 on Chromosome 2.4. As you can see that region is NOT there....In other words it was either "removed' deliberately or not recoverable via aDNA degradation. 5. If we do this analysis for ALL CODIS STR and they are not present for ALL Abusir then we can safely assume it was removed for nefarious reasons. 6. Some of the Abusir aDNA was removed or deleted. My guess it is the "African" portion So what ElMaestro hinted at was correct. The CODIS STR DNA material was removed. Yes, they learnt from their mistake with the Amarnas. It took me almost 2 months working on this. Sage I know you are meticulous and patient and this is what is needed. But we have to find another way.. I am thinking TreeMix or some other software. TreeMix should be able to identify the "parental" population between the Abusir and Africans. I will do a couple more Abusirs to confirm the CODIS data was removed deliberately If it was removed we can assume the result...they skewed the results by removing the CODIS STR data. Anyways I am a little embarrassed. I had the answer in front of me a few weeks ago and missed it. Here is the result...
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Post by djoser-xyyman on Oct 25, 2018 12:22:28 GMT -5
I don’t' think you get it BBH. Not the sharpest knife in the draw? Who- how would i know. Why? does it matter. I don't fugking care if I am banned or not. I am not college age.... son ...with the stupid psychobabble. If fact the banning this time gave me time to work on other things besides responding to stupid papers. Now I have gotten to analyzing the raw data myself. I may be able to do the same level of work as Reich and Paabo. Lazaridis only obtain data from the machine (illuninia) and put a "spin" on it. And he was dishonest about it. No. I asked you WHY and WHO banned you. Because I didn't. Anyways I lifted your suspension so stay outta trouble. And don't worry if I'm a "tool" or whatever, just be glad one of the admins still vouching for your ass.
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Post by djoser-xyyman on Oct 25, 2018 12:26:26 GMT -5
Oh! I have honed in my Software skills. Took me back 20years but I got my head around SAMtools, HIPSTR, Glacctools, HTSlib and a few others. Took me awhile. To the newbies the key is the libraries make sure you have all the required libraries installed before attempting to "./configure ." and "make install". You will get numerous and irritating errors about missing development files. You can use Cyg-WIN but Linux/Ubuntu is far better. I needed to purchase an old dual core PC and setup dual boot for WIn/ Ubuntu to get these apps up and running. But I got it and you can too
Bedtools and Bedops is still giving me hic-cups depending on what computer or operating system I use. USE LINUX/UBUNTU and not Mac OS Lion or lower or Cyg-Win. Wasted my money buying an older Mac. Bedtools and/or BEDOPs is absolutely needed for Reference Standard alignment and genetic analysis.
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Post by BlessedbyHorus on Oct 25, 2018 12:38:03 GMT -5
This is why we need more people of African descent in this type of field.
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Post by djoser-xyyman on Oct 25, 2018 12:54:49 GMT -5
I will be across at ES shortly working on a thread for there....
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Post by BlessedbyHorus on Oct 25, 2018 12:57:17 GMT -5
Can't wait.
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Post by Tukuler al~Takruri on Oct 25, 2018 13:31:59 GMT -5
Whoa pahdnuh You can't blame me for squat. Sammi owns the damn joint. He didn't do squat for me. He gave Rey everything but the bill. I didn't give anything away. Rey rescinded my little mod power. Only posted this cos you put me in it. My apologies to the board for airing dirty laundry irrelevant to Egyptsearch Reloaded. I know when and how to send a private message. More pertinent Congratulations on another Mensa original and vital discovery! Go ask "Management". You do realize you are being a tool by these people. Just saying...... Who is Management? Punk Rey or Neal/Sammi. I believe ElMaestro and Lioness are tools like you. But I have to put some of the blame on Sage. He had the keys and he gave it away. No telling how long he would have kept it but at least he had it.
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